Preparation of successfully amplified petB from DNAs 4-28 to 4-36

After analyzing our PCR products via a DNA gel, we moved forward with 8 of the 9 samples, excluding 4-30 (Diaphananthe pellucida) as we did not detect visible product for this sample (no band was visible on the DNA gel). Our PCR results show high yield for samples: 4-28, 4-29, 4-34, 4-35 and moderate to low yield for samples: 4-31, 4-32, 4-33, 4-36. All products only had bands specific for the petB intron. By using Exonuclease I and Alkaline Phosphotase with incubation at 37°C, we purified our 8 samples of excess primers (single stranded DNA) and dNTPs. Our quantified DNA purification results are illustrated in the following table (Table 1).

Table 1: DNA Quantification via NanoDrop Spectrophotometer

Sample ID ng/ul Date
4-28B 388.19 3/22/2012
4-29B 373.6 3/22/2012
4-31B 404.16 3/22/2012
4-32B 417.56 3/22/2012
4-33B 381.19 3/22/2012
4-34B 369.74 3/22/2012
4-35B 376.22 3/22/2012
4-36B 402.79 3/22/2012